Wednesday, December 18, 2024

Human Chimp DNA Similarity

 

Human And Chimp DNA Similarity—Not What We’ve Been Led To Believe

Bodie Hodge, M.Sc., B.Sc., PEI

Biblical Authority Ministries, December 18, 2024

You’ve probably heard that humans and chimps are somewhere around 98% similar in our genetic makeup. There is a huge problem with this though. The claim that humans and chimpanzees share 98% of their DNA is an oversimplification of a comparison of “cherry-picked” segments of DNA and thus a misrepresentation of the actual genetic evidence. The amount of similarity, after further research is much, much larger than 2%.

Is Similarity A Good Or Bad Find?

There is similarity though, but not 98%. That number that keeps getting thrown out there. What might surprise you though is that creationists expect a significant amount of similarity.

The fact that God created man with a physiology similar to mammals should automatically clue anyone off that there is going to be similarity. Of course, man is not an animal; and even though our bodies are made from dust with a physiology similar to certain animals, man is made in a more unique way—in the image of an eternal, ruling, logical, knowledgeable, wise, and loving God.

The fact that we discovered similarity in our DNA (with hosts of other animals and plants too!) is an amazing confirmation of what we expect to find in light of Scripture. God is the brilliant designer—the greatest of engineers!

The test of a great engineer is to be able to reuse ideas, designs, materials, and parts in multiple applications—sometimes with slight modifications to the specific use. Seeing how God did this across the board with plants as well as with animal life—dwarfs anything that man could do. This excites me as a creationist. 

Apes like chimpanzees, gorillas, and others are not related to man.

Nevertheless, we need to be honest with the genetic data about similarity—there is some, but definitely not 98%. So, what is it? We’ll get to that but first, you need to understand where the 98% number came from, then you’ll be able to see why the new, more thorough, data is so powerful!

Where Did The 98% Number Come From?

By 1990, the claim of 98% similarity between humans and chimps was engrained in society. According to J. Cohen, it began with A. Wilson and M. King in the mid-1970s.[1] Other built on this.[2]

The 98% claim further took the world by storm when the human and chimp DNA was mapped and researchers were arguing genetically that it was 96-99%.[3]

However, the 98% similarity statistic arises from a flawed methodology that assumes the religion of secular humanism to be true from the outset (which holds to evolution). As a result, when secular scientists compare human and chimp genomes, they align sequences based on similarity and neglect the rest. Yes, you read that right!

Follow me here, significant portions of the genomes do not align well and are often excluded from the comparisons. This cherry-picking of data creates an inflated measure of similarity.

For example:

  • Only the most comparable DNA sections (exons or protein-coding regions) were often compared.
  • “Non-alignable” regions, which can differ significantly, were excluded, leading to an incomplete picture.

Thus, the comparison isn't a direct measurement of the entire genomes. In other words, if you ignore sections that aren’t similar and just look at sections that are, then you are not being true to the % similarity. Let me do an analogy to give you an idea of what is going on.

Let’s say you are in a grocery shop and you are going to compare two different cartons of eggs. When you look at the first dozen, all the eggs look good and none are cracked. Then you look at the second dozen and 5 are cracked and messy.

Now, if the grocer came up and said they are basically the same and offers to show you by closely comparing 6 good eggs from both containers to convince you that they are basically the same and then tries to sell you the dozen that contains the 5 broken eggs. Would you buy that argument (and that dozen eggs with 5 broken)? The grocer did an oversimplification and misrepresentation of the entire carton of eggs.

In the same way, the claim that humans and chimpanzees share 98% of their entire genome is an oversimplification and misrepresentation of genetic evidence.

The Entire Genome Comparisons

When the entire genomes of humans and chimpanzees were finally examined, the differences became far more than the often-cited 1–2%. There are major differences in structure such gene order, chromosome structure, indels, and genome length but are ignored in these early percentage-based similarity claims.

The 2005 analysis of the chimpanzee genome also pointed out that when considering the things that were initially not analyzed (e.g., insertions, deletions, and duplications), the differences between humans and chimps add up to be closer to 15% or more.[4]

Stop for a moment and ponder this—this is not a 3% difference or even a 4% difference, but a massive 15% difference! The initial claims of 98% similar were off by at least 13% by the evolutionists own reckoning. Yes, breathe this in for a moment and notice how the secular worldview influenced an entire generation to believe that humans and chimps were 98% when it wasn’t even close. By this study, 85% similar (could be more!). That is huge.

One should also highlight the importance of considering functional differences in the genome. Even small genetic differences can lead to major distinctions in traits, behavior, and biology. For example, regulatory DNA regions, which control how genes are expressed, show major differences between humans and chimps. Also, the expression and timing of genes involved in brain development, speech, and locomotion vary a lot.

To put this into perspective, even if there were a “superficial similarity” of 98% in sequences, the function of that DNA is what matters. Humans and chimps are fundamentally distinct creatures in terms of biological complexity, cognition, and design.

Anatomically, human and chimp feet have many differences.

One area where differences are especially dramatic is the Y chromosome—obviously talking males here. Researchers have shown in their studies that the human Y chromosome and chimp Y chromosome differ considerably—by up to 30–50% in sequence and structure.[5] This utterly destroys the idea of near-total genetic similarity. We are now talking about 50-70% differences in the y chromosomes. X chromosomes don’t fare much better when compared. Geneticist Jeffry Tompkins writes:

“Only 69% of the chimpanzee X chromosome was similar to human and only 43% of the Y chromosome. Genome-wide, only 70% of the chimpanzee DNA was similar to human under the most optimal sequence-slice conditions.”[6]

After the latest round of research, the overall average DNA similarity between humans and chimps is sitting at about 70%.[7] That 30% dissimilar is like an avalanche on the evolutionary claims of close similarity. This is massive dissimilarity throws a monkey wrench into the evolutionary claim of a close human-chimp ancestor.

Concluding Remarks

The oft-cited 98% similarity between human and chimpanzee DNA is a result of selective comparisons, “leaving-out” large genomic differences, and “incorrect-method-based” assumptions that favor evolutionary conclusions.

When the entire genome is considered, humans and chimps are far less similar, both genetically and functionally (only 70% similar). These findings actually more in line with what we expect with the biblical view that humans are uniquely created in God's image, distinct from animals.

To better understand the details of this discussion, I highly recommend that you read:

1. D. DeWitt What About the Similarity Between Human and Chimp DNA?, The New Answers Book 3 (Ham and Hodge gen. eds.), January 14, 2014.

2. J. Bergman and J. Tomkins Is the human genome nearly identical to chimpanzee?—a reassessment of the literature, Journal of Creation 26(1):54–60, April, 2012

3. J. Tompkins Comprehensive Analysis of Chimpanzee and Human Chromosomes Reveals Average DNA Similarity of 70%, Answers Research Journal 6 (2013): 63–69, February 20, 2013.



[1] J. Cohen, Relative differences: the myth of 1%, Science Magazine 316:1836, June, 29, 2007.

[2] Hoyer et al., Examination of hominid evolution by DNA sequence homology, Journal of Human Evolution 1:645–649, 1972; C. Sibley and J. Ahlquist, The phylogeny of the hominoid primates, as indicated by DNA-DNA hybridization, Journal of Molecular Evolution 20:2–15, 1984; C. Sibley, DNA hybridization evidence of hominoid phylogeny: a reanalysis of the data, Journal of Molecular Evolution 30:202–236, 1990. 

[3] Broad Institute Communications, Comparison of human and chimpanzee genomes reveals striking similarities and differences, Broad Institute, August 31, 2005, https://www.broadinstitute.org/news/comparison-human-and-chimpanzee-genomes-reveals-striking-similarities-and-differences; The Chimpanzee Sequencing and Analysis Consortium. Initial sequence of the chimpanzee genome and comparison with the human genomeNature. 437:69-87. DOI:10.1038/nature04072.

[4] The Chimpanzee Sequencing and Analysis Consortium. Initial sequence of the chimpanzee genome and comparison with the human genomeNature. 437:69-87. DOI:10.1038/nature04072.

[5] J. Tompkins Comprehensive Analysis of Chimpanzee and Human Chromosomes Reveals Average DNA Similarity of 70%, Answers Research Journal 6 (2013): 63–69, February 20, 2013.

[6] Ibid.

[7] Ibid.

Human Chimp DNA Similarity

  Human And Chimp DNA Similarity— Not What We’ve Been Led To Believe Bodie Hodge, M.Sc., B.Sc., PEI Biblical Authority Ministries, Decem...